Installation instructions

Installation of the icaparser package

It is recommended to create a new virtual environment with Python >= 3.9 and to install the icaparser package in that environment. Activate the environment and run:

pip install "git+https://github.com/Bayer-Group/ica-parser.git"

If you want to install a particular development branch, use

pip install "git+https://github.com/Bayer-Group/ica-parser.git@BRANCHNAME"

If you use Jupyter notebooks, the virtual environment should be added as a new Jupyter kernel. See Using Virtual Environments in Jupyter Notebook and Python - Parametric Thoughts how to do that.

Installation of ipywidgets

Required for progress bars in Jupyter. Please refer to the Jupyter or JupyterLab documentation how to install the widgets. For example:

conda install jupyter # if not installed yet
conda install jupyterlab_widgets
jupyter labextension install jupyter-matplotlib
jupyter lab build
exit

→ Restart Jupyter